Update repository to use ODK 1.4

[anitacaron]

Working with @zoependlington to update the repository.

• The template gaz_xrefs.tsv was transformed into a component components/gaz_xrefs.owl and then merged in the hancestro-edit.ofn
• The imports were merged into one file imports/merged_import.owl

[daniwelter]

@anitacaron I haven't had a chance to dive into the details yet but something is going very badly wrong here. hancestro_base.owl looks fine and as expected but hancestro.owl and hancestro_full.owl are a complete mess. There's a bunch of classes where the annotations don't import correctly, as well as the whole upper section of the BFO-compliant structure, but the HANCESTRO native classes are still at root level.

I'll try to find some time later this week to go over this with a fine toothcomb and figure out where it falls over. Any pointers welcome.

[anitacaron]

The BFO classes still are in the hancestro_bfo.owl file. The hancestro.owl and hancestro-full.owl are now what it was previously the hancestro_inferred.owl

[daniwelter]

@anitacaron as I said, something somewhere has gone very badly wrong. I'm currently working my way through the Makefile to see where things might have fallen over.

Here for comparison the current hancestro_inferred.owl (left) and the new hancestro_full.owl (right)

[daniwelter]

Ok, I think I can see the problems. For one, the OBI import was incorporated into the non-BFO version whereas it should only be in the BFO version. Also, there's some stripping of the GEO import that needs to happen and I don't think it does. I'll try to reverse-engineer the individual steps tomorrow so I know what the artefacts look like vs what they should look like, and then we can see how we can fix this monster.

[anitacaron]

No need to worry, @daniwelter. The dangling classes come from the new way I created the imports. If this is an issue, I can create each import, which will look more like the previous version.