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EBISPOT / xgwas-curator-tasks

An internal repo for GWAS curators to track issues
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Add note to readme for GCST90014045 #16

Closed ljwh2 closed 1 year ago

ljwh2 commented 1 year ago

For GCST90014045, the authors have only shared sumstats for Chr1. We contacted them and they confirmed they can only share the top associations genomewide (see gwas-info with file attached).

We should add a note to the readme file stating that we are aware of an issue with the file and only variants on chr1 are available. The harmonised files should be removed.

@jdhayhurst is there any way to remove the harmonised files and make sure they do't get re-harmonised with the new pipeline? Or should we just hold off removing them till the reharmonisation is done?

ljwh2 commented 1 year ago

Closing this ticket since there is another issue with the file