EBISPOT / xgwas-curator-tasks

An internal repo for GWAS curators to track issues
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Sample description curation errors #24

Open ljwh2 opened 10 months ago

ljwh2 commented 10 months ago

While doing some ancestry analysis I found errors in the following studies:

No discovery sample description: GCST90093220 GCST90093223 GCST90093226 GCST90093229 GCST90093232 GCST90093235 GCST90093238 GCST90093217 GCST90102942

More than one of same ancestry group in discovery: GCST000843 GCST003123 GCST003124 GCST003125 GCST003976 GCST003977 GCST003978 GCST005161 GCST006144 GCST006435 GCST007357 GCST007407 GCST007408 GCST007409 GCST009158 GCST010069 GCST010070 GCST010090 GCST010302 GCST011977 GCST012977 GCST90000032 GCST90085697 GCST003761 GCST006246 GCST006391 GCST006392 GCST006393 GCST006857 GCST006858 GCST007998 GCST008966 GCST011588 GCST006170 GCST012716 GCST009514 GCST009515

I have not looked into these in any detail. We should consider adding validation for these in future, since there is no scenario where there should be more than one of the same ancestry category.