Open ljwh2 opened 2 years ago
Daniel reported several studies with apparently duplicated associations, not explained by p-value text. These should be checked and removed. See list below.
studyId|count| ambiguous_variants|
+------------+-----+----------------------------------------+ |GCST004776_1| 1| [12_20220607_A_G]| | GCST005335| 1| [7_128954129_T_C]| |GCST009696_2| 1| [7_75644121_T_C]| | GCST001894| 1| [1_22123994_C_T]| | GCST009144| 1| [15_63782903_T_G]| | GCST007294| 1| [15_83907596_G_A]| | GCST007093| 1| [2_70490521_A_G]| |GCST008473_1| 1| [6_106394073_T_C]| | GCST008687| 1| [7_146387481_G_A]| |GCST004233_1| 1| [20_41095698_T_C]| | GCST003799| 1| [8_116611854_T_C]| |GCST004232_2| 1| [12_124777047_C_T]| | GCST005908| 1| [14_94378610_C_T]| | GCST001233| 1| [22_43930116_G_A]| | GCST000820| 1| [9_27556782_G_A]| | GCST005232| 1| [17_2671527_G_A]| | GCST004142| 1| [16_89689495_A_G]| | GCST000707| 1| [5_33951588_C_G]| | GCST006308| 1| [11_116792991_G_A]| |GCST90032272| 1| [3_111389687_G_T]| | GCST004280| 1| [12_115490635_G_C]| | GCST006719| 1| [16_52565276_C_T]| | GCST008473| 1| [6_106394073_T_C]| | GCST005591| 1| [10_112967084_G_A]| | GCST003044| 1| [6_31306603_T_C]| | GCST005555| 1| [1_161638578_A_G]| |GCST001628_1| 1| [3_89485227_T_C]| |GCST90032558| 1| [5_179368259_G_A]| | GCST004781| 1| [6_31379201_A_T]| |GCST004507_1| 1| [5_56510924_A_G]| |GCST004733_1| 1| [14_72020336_C_T]| |GCST90032594| 1| [16_62008379_T_A]| | GCST000414| 1| [12_88496894_A_G]| |GCST90090977| 1| [16_53787213_A_G]| | GCST007849| 1| [21_45455861_G_A]| |GCST90032621| 1| [12_77254157_G_T]| |GCST006482_2| 1| [4_7844513_C_T]| |GCST008691_1| 1| [7_137875053_T_C]| |GCST004284_4| 1| [9_8446518_G_T]| | GCST007295| 1| [15_83907596_G_A]| |GCST90012792| 1| [10_62805132_G_T]| | GCST006418| 1| [1_221995092_G_A]| | GCST002331| 1| [8_100012277_A_C]| | GCST004335| 1| [X_154536002_C_T]| |GCST007294_1| 1| [15_83907596_G_A]| | GCST007382| 1| [22_18927834_C_T]| |GCST007295_1| 1| [15_83907596_G_A]| |GCST007382_8| 1| [7_56079263_T_C]| |GCST008682_1| 1| [7_121864095_G_A]| | GCST012442| 1| [16_2497068_A_G]| |GCST012442_1| 1| [11_118262596_T_A]| |GCST90100552| 1| [16_83278888_C_T]| |GCST006061_2| 1| [12_114653212_C_T]| | GCST008045| 1| [9_133279427_T_C]| | GCST006433| 1| [11_87143365_TC_T]| | GCST008037| 1| [9_133279427_T_C]| | GCST009731| 1| [9_133279427_T_C]| | GCST007361| 1| [6_31392512_A_G]| | GCST000580| 1| [9_4763176_T_C]| | GCST007738| 1| [2_27518370_T_C]| |GCST90102283| 1| [7_114443495_C_G]| |GCST90102492| 1| [4_69615987_C_T]| | GCST003844| 2| [6_118346359_T_C, 3_53248287_A_G]| | GCST007344| 2| [4_76480299_C_T, 6_32612725_G_A]| | GCST003177| 2| [1_177920345_A_G, 1_109540264_C_T]| | GCST001917| 2| [17_46710944_G_A, 17_45439036_A_G]| | GCST004132| 2| [3_53099133_C_G, 3_188683372_C_T]| |GCST90094774| 2| [12_11103198_A_C, 22_42751200_T_C]| | GCST009826| 2| [11_2158112_C_T, 17_72101710_A_G]| | GCST011501| 2| [1_151812071_G_A, 10_89093116_C_T]| | GCST003045| 2| [1_19845367_G_A, 7_107839681_A_T]| | GCST004007| 3|[16_88787321_C_T, 1_158605939_CT, 8...| | GCST008413| 3|[1_155168172_C_T, 1_3705742_T_G, 16_2...| |GCST90013693| 3|[14_76909348_C_A, 22_28973410_A_C, 12...| | GCST005196| 4|[11_65623846_G_A, 8_125478730_AT, 6...| |GCST004578_5| 5|[1_172361919_A_G, 2_164656581_TC, 1...| | GCST009158| 11|[11_232855_T_C, 4_94580015_T_C, 4_536...| | GCST006660| 15|[10_103816854_T_C, 2_27550188_T_C, 13...| |GCST90013445| 35|[2_191105394_C_G, 10_33137219_TC, 5...|
Daniel reported several studies with apparently duplicated associations, not explained by p-value text. These should be checked and removed. See list below.
+------------+-----+----------------------------------------+ |GCST004776_1| 1| [12_20220607_A_G]| | GCST005335| 1| [7_128954129_T_C]| |GCST009696_2| 1| [7_75644121_T_C]| | GCST001894| 1| [1_22123994_C_T]| | GCST009144| 1| [15_63782903_T_G]| | GCST007294| 1| [15_83907596_G_A]| | GCST007093| 1| [2_70490521_A_G]| |GCST008473_1| 1| [6_106394073_T_C]| | GCST008687| 1| [7_146387481_G_A]| |GCST004233_1| 1| [20_41095698_T_C]| | GCST003799| 1| [8_116611854_T_C]| |GCST004232_2| 1| [12_124777047_C_T]| | GCST005908| 1| [14_94378610_C_T]| | GCST001233| 1| [22_43930116_G_A]| | GCST000820| 1| [9_27556782_G_A]| | GCST005232| 1| [17_2671527_G_A]| | GCST004142| 1| [16_89689495_A_G]| | GCST000707| 1| [5_33951588_C_G]| | GCST006308| 1| [11_116792991_G_A]| |GCST90032272| 1| [3_111389687_G_T]| | GCST004280| 1| [12_115490635_G_C]| | GCST006719| 1| [16_52565276_C_T]| | GCST008473| 1| [6_106394073_T_C]| | GCST005591| 1| [10_112967084_G_A]| | GCST003044| 1| [6_31306603_T_C]| | GCST005555| 1| [1_161638578_A_G]| |GCST001628_1| 1| [3_89485227_T_C]| |GCST90032558| 1| [5_179368259_G_A]| | GCST004781| 1| [6_31379201_A_T]| |GCST004507_1| 1| [5_56510924_A_G]| |GCST004733_1| 1| [14_72020336_C_T]| |GCST90032594| 1| [16_62008379_T_A]| | GCST000414| 1| [12_88496894_A_G]| |GCST90090977| 1| [16_53787213_A_G]| | GCST007849| 1| [21_45455861_G_A]| |GCST90032621| 1| [12_77254157_G_T]| |GCST006482_2| 1| [4_7844513_C_T]| |GCST008691_1| 1| [7_137875053_T_C]| |GCST004284_4| 1| [9_8446518_G_T]| | GCST007295| 1| [15_83907596_G_A]| |GCST90012792| 1| [10_62805132_G_T]| | GCST006418| 1| [1_221995092_G_A]| | GCST002331| 1| [8_100012277_A_C]| | GCST004335| 1| [X_154536002_C_T]| |GCST007294_1| 1| [15_83907596_G_A]| | GCST007382| 1| [22_18927834_C_T]| |GCST007295_1| 1| [15_83907596_G_A]| |GCST007382_8| 1| [7_56079263_T_C]| |GCST008682_1| 1| [7_121864095_G_A]| | GCST012442| 1| [16_2497068_A_G]| |GCST012442_1| 1| [11_118262596_T_A]| |GCST90100552| 1| [16_83278888_C_T]| |GCST006061_2| 1| [12_114653212_C_T]| | GCST008045| 1| [9_133279427_T_C]| | GCST006433| 1| [11_87143365_TC_T]| | GCST008037| 1| [9_133279427_T_C]| | GCST009731| 1| [9_133279427_T_C]| | GCST007361| 1| [6_31392512_A_G]| | GCST000580| 1| [9_4763176_T_C]| | GCST007738| 1| [2_27518370_T_C]| |GCST90102283| 1| [7_114443495_C_G]| |GCST90102492| 1| [4_69615987_C_T]| | GCST003844| 2| [6_118346359_T_C, 3_53248287_A_G]| | GCST007344| 2| [4_76480299_C_T, 6_32612725_G_A]| | GCST003177| 2| [1_177920345_A_G, 1_109540264_C_T]| | GCST001917| 2| [17_46710944_G_A, 17_45439036_A_G]| | GCST004132| 2| [3_53099133_C_G, 3_188683372_C_T]| |GCST90094774| 2| [12_11103198_A_C, 22_42751200_T_C]| | GCST009826| 2| [11_2158112_C_T, 17_72101710_A_G]| | GCST011501| 2| [1_151812071_G_A, 10_89093116_C_T]| | GCST003045| 2| [1_19845367_G_A, 7_107839681_A_T]| | GCST004007| 3|[16_88787321_C_T, 1_158605939_CT, 8...| | GCST008413| 3|[1_155168172_C_T, 1_3705742_T_G, 16_2...| |GCST90013693| 3|[14_76909348_C_A, 22_28973410_A_C, 12...| | GCST005196| 4|[11_65623846_G_A, 8_125478730_AT, 6...| |GCST004578_5| 5|[1_172361919_A_G, 2_164656581_TC, 1...| | GCST009158| 11|[11_232855_T_C, 4_94580015_T_C, 4_536...| | GCST006660| 15|[10_103816854_T_C, 2_27550188_T_C, 13...| |GCST90013445| 35|[2_191105394_C_G, 10_33137219_TC, 5...|