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EBISPOT / xgwas-curator-tasks

An internal repo for GWAS curators to track issues
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White ancestry clean-up #5

Open ljwh2 opened 1 year ago

ljwh2 commented 1 year ago

"White ancestry" or "non Hispanic White" should not be extracted according to the ancestry guidelines, European ancestry should be used instead.

Some publications need cleaning up: 35023831 34523824 34103634 34659352 34197840 34239500 34680877 34006833 34290314 34127677 33034629 33204752 35240056 35729236 35999565 35769078 35120996 35947748 35776183 33311554 34560273 33887194 33755393 34014839 35653334 33115273

ljwh2 commented 1 year ago

@ljwh2 to create a spreadsheet

ljwh2 commented 1 year ago

https://docs.google.com/spreadsheets/d/1BD1zva-q5D9PtZT_9nE-BVwP7Tt_7IEan9itR9U_uo0/edit?usp=sharing

ljwh2 commented 1 year ago

@Santhi1901 when you've done one of these, could you please add an SOP in the spreadsheet for Peggy to follow?

ljwh2 commented 1 year ago

Stuck due to problems re-importing after editing template. Unknown whether we can re-import after using the free text bulk edit feature - many of the papers were published before this feature was released. In first instance, ask developers if they can bulk edit these samples.

ljwh2 commented 1 year ago

@ljwh2 to follow up on above query

ljwh2 commented 1 year ago

@ljwh2 add this to GxE dev ticket

ljwh2 commented 1 year ago

Epic: https://app.zenhub.com/workspaces/gwas-59df823c4a6feb3786810391/issues/gh/ebispot/goci/1142

ljwh2 commented 3 months ago

@mcerezof please confirm the publications you found recently are included in the list above