EBIvariation / CMAT

ClinVar Mapping and Annotation Toolkit
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Improve pipeline counts and visualisations #355

Open apriltuesday opened 1 year ago

apriltuesday commented 1 year ago

Categorise each portion of ClinVar processed by the pipeline to provide visual explanation of the impact each part of the pipeline has on the output.

Some initial thoughts:

apriltuesday commented 1 year ago

Another thing we've discussed regarding this is to incorporate the sankey diagram creation into the regular running of the pipeline. This can ensure that we run it regularly and also allows us to add to it, e.g. which variant types are processed by which consequence pipeline.