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EBIvariation / CMAT

ClinVar Mapping and Annotation Toolkit
Apache License 2.0
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Issue 416 - Parallelise evidence string generation #421

Closed apriltuesday closed 8 months ago

apriltuesday commented 8 months ago

Closes #416 Closes #420

apriltuesday commented 8 months ago

Counts from test run match last submission, aside from a very silly error that I just fixed. Runtime was about 14 hours for the entire pipeline, as opposed to about 26 hours before. About 2 hours of that is consequence prediction, so we've basically halved the run time for the evidence generation. I think it's definitely still worth speeding up the JSON validation.