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EBIvariation / opentargets-pharmgkb

Pipeline to provide evidence strings for Open Targets from PharmGKB
Apache License 2.0
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Add percentages to counts report #14

Closed apriltuesday closed 1 year ago

apriltuesday commented 1 year ago

Example report from tests:

Total clinical annotations: 10
    With RS: 9 (90.00%)
        1. Exploded by allele: 30 (3.3x)
        2. Exploded by drug: 66 (2.2x)
        3. Exploded by phenotype: 78 (1.2x)
Total evidence strings: 78
    With CHEBI: 60 (76.92%)
    With EFO phenotype: 30 (38.46%)
    With functional consequence: 42 (53.85%)
    With VEP gene: 42 (53.85%)
Gene comparisons per annotation
    With PGKB genes: 8 (80.00%)
    With VEP genes: 4 (40.00%)
    PGKB genes != VEP genes: 5 (50.00%)