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EBIvariation / opentargets-pharmgkb

Pipeline to provide evidence strings for Open Targets from PharmGKB
Apache License 2.0
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Evidence string generation for 2024.03 release #34

Closed apriltuesday closed 8 months ago

apriltuesday commented 8 months ago 
Total clinical annotations: 5101
        With RS: 4505 (88.32%)
                1. Exploded by allele: 15735 (3.5x)
                2. Exploded by PGx category: 16078 (1.0x)
                3. Exploded by drug: 21767 (1.4x)
                4. Exploded by phenotype: 26973 (1.2x)
Total evidence strings: 36250
        With CHEBI: 31256 (86.22%)
        With EFO phenotype: 16518 (45.57%)
        With functional consequence: 23939 (66.04%)
        With target gene: 34123 (94.13%)
Total RS: 2821
        With parsed alleles: 2797 (99.15%)
                With >2 alleles: 31 (1.11%)
Total haplotype IDs: 599
        Resolved to PGKB IDs: 406 (67.78%)