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EBIvariation / vcf-validator

Validation suite for Variant Call Format (VCF) files, implemented using C++11
Apache License 2.0
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Incorrect complaint about GP format field in vcf 4.2 #149

Closed kscheffler closed 4 years ago

kscheffler commented 5 years ago

The GP format field is defined as a phred-scaled quantity (i.e. typically larger than 1) in vcf format 4.2 and as a probability between 0 and 1 in vcf format 4.3. However, vcf-validator (version 0.7) reports an error "value does not lie in the interval [0,1]" for vcf 4.2.

jmmut commented 5 years ago

Yes, you're right, thanks for the issue, we'll deal with this as the schedule allows.

tcezard commented 4 years ago

Now tracked in EVA-2049: closing