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EBIvariation / vcf-validator

Validation suite for Variant Call Format (VCF) files, implemented using C++11
Apache License 2.0
129 stars 39 forks source link

add support to read vcf files from stdin #153

Closed srbcheema1 closed 5 years ago

srbcheema1 commented 5 years ago

This PR is to add support of reading vcf files directly from stdin in assembly_checker tool. Now we could also check dynamically generated vcf files through stdin using 

vcf_assembly_checker -f /path/to/fasta_file < /path/to/vcf_file

OR 

cat file.vcf | vcf_assembly_checker -f /path/to/fasta_file