I just ran a small VCF file (attached) with vcf-validator (v.0.9.4). Although the warnings are fully understandable, cases of duplicated variants are reported, and I am struggling to see how my variants should be re-formatted to pass the validation? Could you provide any input on this matter?
Hi,
cc @danielvo
I just ran a small VCF file (attached) with vcf-validator (v.0.9.4). Although the warnings are fully understandable, cases of duplicated variants are reported, and I am struggling to see how my variants should be re-formatted to pass the validation? Could you provide any input on this matter?
sample_VCF.vcf.errors_summary.1638271851477.txt sample_VCF.txt
Any help much appreciated,
kind regards, Sigve