EBIvariation / vcf-validator

Validation suite for Variant Call Format (VCF) files, implemented using C++11
Apache License 2.0
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GA4GHTT-232 - vcf4.4 initial changes #240

Closed vasudeva8 closed 3 months ago

vasudeva8 commented 3 months ago

Initial changes to support VCF v4.4.

Made v4.4 ragel file, using v4.3 ragel with version change alone, that it parses files conforming to v4.3 with v4.4 as version gets validated. v4.4 specific changes are to be identified and updated.

Test binaries and files updated (there were a few failed case data files which couldn't be opened / updated are left as such; also files which were not matching to v4.3 already are left as such).

test suit, v4.4 specific test binary and other versions works without failures. assembler, debugulator and validator works but further tests to be done.