GA4GHTT-261 - changes for CN, SVLEN, SVCLAIM

EBIvariation / vcf-validator

Validation suite for Variant Call Format (VCF) files, implemented using C++11

Apache License 2.0

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GA4GHTT-261 - changes for CN, SVLEN, SVCLAIM #246

Closed vasudeva8 closed 2 weeks ago

vasudeva8 commented 1 month ago

4.4 updated, CN, SVLEN type change, SVCLAIM added. Mandatory field check added, to deal with specific structural variants BND removed from valid allele set Tests and test files updated.

Assembler, debuggulator yet to update. (The draft PR made earlier left as it is for reference as more validations are made)

vasudeva8 commented 1 month ago

A few of the 'should' cases were considered as 'must' and generated errors. They are now moved as optional checks to make warnings instead of errors.