Streamline workflow - Githubissues

ECGen / cg_simulations

Community genetics simulations for the Lau et al. 2014 manuscript.

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Streamline workflow #8

Closed MKLau closed 10 years ago

MKLau commented 10 years ago

Workflow 27Feb2014 11:52am

Create simulated communities using mkComs.R Generate null communities using mkNull*.R (separate for r00,r0,c0,r1) Conduct stats for Cscores, Nestedness and Modularity using cgs_Stats.sh Post process results (cs.txt,nest.txt,mods.txt and .txt.names.txt for the associated community) Get observed (i.e. original) community structure

MKLau commented 10 years ago

separate the null community processes for each null type (i.e., r00, r0, c0, r1)
separate collecting the stats for each null type
write a script for generating the observed stats for each community
write a script for post-processing the results

MKLau commented 10 years ago

Now using qsub with new workflow.