Error: Failed to install 'EMLassemblyline' from GitHub

[Cal10Lee]

I attempted to install the EML package from r-studio (using this line of code: remotes::install_github("EDIorg/EMLassemblyline") and got this error message:

Error: Failed to install 'EMLassemblyline' from GitHub: Failed to install 'taxonomyCleanr' from GitHub: HTTP error 404. Not Found

Did you spell the repo owner (EDIorg) and repo name (EDIutils) correctly?

• If spelling is correct, check that you have the required permissions to access the repo.

I'm still a relatively new r user, is there something I'm missing? Thank you in advance.

[yvanlebras]

Hi @Cal10Lee

I just try on my RStudio instance to install it with this command remotes::install_github("EDIorg/EMLassemblyline") (the same than you) and it seems to work. Are you sure this is not "just" a transient internet connexion issue ?

[clnsmth]

Thanks for helping with this @yvanlebras. Yes, the 404 response suggests the client was unable to communicate with the GitHub server.

@Cal10Lee if this is still an issue, would you mind sending the response you get from running sessionInfo() in your RStudio Console? Thanks.

[Cal10Lee]

I'm pretty sure it's not a transient internet connection issue, I asked a colleague of mine working from home to run the same line of code and he had the same issue pop up. Here's the output when I ran sessionInfo():

R version 4.1.1 (2021-08-10) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19043)

Matrix products: default

locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] devtools_2.4.3 usethis_2.1.5

loaded via a namespace (and not attached): [1] magrittr_2.0.3 pkgload_1.2.4 R6_2.5.1 rlang_1.0.2 fastmap_1.1.0 tools_4.1.1
[7] pkgbuild_1.3.1 sessioninfo_1.2.2 cli_3.3.0 withr_2.5.0 ellipsis_0.3.2 remotes_2.4.2
[13] rprojroot_2.0.3 lifecycle_1.0.1 crayon_1.5.1 brio_1.1.3 processx_3.5.3 purrr_0.3.4
[19] callr_3.7.0 fs_1.5.2 ps_1.7.0 testthat_3.1.4 curl_4.3.2 memoise_2.0.1
[25] glue_1.6.2 cachem_1.0.6 compiler_4.1.1 desc_1.4.1 prettyunits_1.1.1

[clnsmth]

Hi @Cal10Lee. The bug has been resolved and the fix pushed to the master branch. Please try reinstalling again (remotes::install_github("EDIorg/EMLassemblyline")) and let me know if you have any issues. Thanks for your patience.

[Cal10Lee]

Just installed it, no issues. Thank you!

[clnsmth]

Thank you for uncovering this bug @Cal10Lee!