EDIorg / ecocomDP

A dataset design pattern and R package for ecological community data.
https://ediorg.github.io/ecocomDP/
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Use taxadb for taxonomic data operations #143

Open clnsmth opened 2 years ago

clnsmth commented 2 years ago

Taxonomic data is central to ecocomDP and fast alignment of taxonomic entities with traversal of associated hierarchies are arguably essential.

Currently, there is no built-in support for operations like these in the ecocomDP R package.

taxadb offers a nice solution to all of this, by providing static snapshots of major taxonomic authorities through a consistent API. Note, we may want to implement this as a suggested package.