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EDIorg / ecocomDP

A dataset design pattern and R package for ecological community data.
https://ediorg.github.io/ecocomDP/
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create meta.xml files for event core and occurrence core #87

Open mobb opened 3 years ago

mobb commented 3 years ago

To generate GBIF submissions from ecocomDP, we will include a meta.xml file describing the tables and columns. We plan to create two types: occurrence core, and event core.

First pass will be column names.

Still to resolve/confirm:

mobb commented 3 years ago

meta files are in the directory: inst/[dwca-type] we will need to set the line ending attribute (sample is \r\n)

clnsmth commented 3 years ago

Line endings are explicitly defined as \r\n

clnsmth commented 3 years ago

@mobb location file name doesn't vary with pkg (I've checked this off the list). What do we need to do about rowType and indexing? Are these items resolved?

tucotuco commented 3 years ago

Hello. I am the convener of the Darwin Core Maintenance Group and have recently read https://doi.org/10.1016/j.ecoinf.2021.101374 and I am concerned about some misconceptions put forth there. I wonder if there is anything I can help with in terms of the best use of Darwin Core and aggregation via GBIF.

mobb commented 3 years ago

Absolutely, @tucotuco - it would be great to have additional input, especially if we are misinterpreting DC. We are still working on this last bit of code. Here is an example of what it currently creates: https://portal.edirepository.org/nis/mapbrowse?packageid=edi.927.1 I am out of the office till later in August - perhaps we can talk then?

tucotuco commented 3 years ago

Great! I look forward to sharing perspectives as we try to flex Darwin Core Archives out of the star schema restriction. Let me know by email when you are ready for a discussion, and thanks!

On Sun, Aug 8, 2021 at 11:13 PM mobb @.***> wrote:

Absolutely, @tucotuco https://github.com/tucotuco - it would be great to have additional input, especially if we are misinterpreting DC. We are still working on this last bit of code. Here is an example of what it currently creates: https://portal.edirepository.org/nis/mapbrowse?packageid=edi.927.1 I am out of the office till later in August - perhaps we can talk then?

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