Open Tushar-87 opened 4 years ago
I get same error. I searched and checked the file 'Improved_Seurat_Pre_Process.R'. I find there is a bug. You can replace this command
clusters[,1]=gsub("-",".",clusters[,1])
with
row.names(clusters)=gsub("-",".",row.names(clusters))
in 'Improved_Seurat_Pre_Process.R'.
Then it will be fine.
Thank you for following up on this MichaelZH24. I'll definitely look into that part of the code and figure out where I can make corrections. If I'm remembering correctly I have made the edit you suggested before and it caused errors for a different subset of users. I'm thinking it may have to do with Seurat versioning but I'm not 100% sure. When I find out a solution, though, I'll let you know and update the code.
Best, Erica
Hello, I ran following code `> wt1cx <- CreateSeuratObject(counts = wt1cx, project = "wt1cx", min.cells = 3, min.features = 200)
I am getting this error. How can I resolve it? @EDePasquale