Open carlyrosewilling opened 4 years ago
Hi,
This error most commonly occurs when the value you selected for the cluster merging parameter ρ' (‘rhop’ in the parameter list) causes too much or too little merging of the clusters, leading to an error in the Markov clustering portion of the algorithm. Altering the value of this parameter according to the following instructions should solve the issue:
The DoubletDecon UI has a built-in function for displaying all possible values of ρ' to make it easier to choose one within in the range. Once selected, make sure to evaluate the appropriateness of the clustering and adjust up or down depending on whether you want less or more cluster merging, respectively.
Please let me know if this doesn't solve the issue!
Best, Erica
Hi there, I saw a similar issue opened when running the package command line, but I am running the GUI. In the console showing the current progress, I get the following warning/error sequence:
After this, I cannot access the cluster similarity viewer, results summary, or interactive heatmap. Just looking for some guidance as to how to approach this and be able to visualize the results/recluster after doublet removal.
Thank you in advance!