search

EDePasquale / DoubletDecon

A tool for removing doublets from single-cell RNA-seq data
69 stars 19 forks source link

untar issue during installation #35

Open xcliu-oc opened 4 years ago

xcliu-oc commented 4 years ago

Hi I'm having trouble with installing doubletdecon, and it seems like R cannot untar the file successfully. image

EDePasquale commented 4 years ago

Hi,

Thank you for reaching out to us. It looks like the issue may be one of two things: 1) it is with the DoubletDecon user interface, which is only usable on Mac. This is because it failed on the DoubletDecon.app portion of the extraction and the directory path it tried to create (with the excessive '\') was invalid. 2) it is an issue with Windows and untaring the file, such as in this example. Just to be sure I would delete any files you have associated with DoubletDecon and try again from fresh download.

I will look into this further and get back to you as soon as I find something out!

Best, Erica

xcliu-oc commented 4 years ago

Thank you for your reply! yes, I have windows 10, and this is same as that example showed. I deleted both devtools and doubletDecon and tried again, still showing same error with even cannot install DoubletDecon and shyDirectoryInupt. (lastime, i was able to install with warning)

Error: Failed to install 'DoubletDecon' from GitHub: Failed to install 'shinyDirectoryInput' from GitHub: (converted from warning) cannot remove prior installation of package ‘rlang’ In addition: Warning message: In utils::untar(tarfile, ...) : ‘tar.exe -xf "C:\Users\TRICIT~1\AppData\Local\Temp\RtmpKELkWM\file3a6c50a64671.tar.gz" -C "C:/Users/TRICIT~1/AppData/Local/Temp/RtmpKELkWM/remotes3a6cab75a40"’ returned error code 1