search

EDePasquale / DoubletDecon

A tool for removing doublets from single-cell RNA-seq data
69 stars 19 forks source link

the results of Demuxlet dataset #37

Open JuanruMaryGuo opened 4 years ago

JuanruMaryGuo commented 4 years ago

Hi, I'm trying to run DoubletDecon using Demuxlet dataset by running 20 times. However, I haven't gotten a result with high accuracy, I'm wondering if there are some errors in my code. Would you please share your code for reference?

By the way, I failed to run the code with the rho bigger than or equal to 1 and finally made it to be 0.61 after consulting other issues in Github. Might it cause the problem?

Thank you in advance!

EDePasquale commented 4 years ago

Hi,

Are you doing each run with the exact same parameters?

JuanruMaryGuo commented 4 years ago

Yes, I just ran the same code 20 times and all of the parameters are the same in the example except rho = 0.61.