Open rahulnutron opened 3 years ago
Hi,
Are you using the version of DoubletDecon I updated yesterday or a previous version? I made an attempt to fix this problem that passed all of my testing, but it still might be broken in some cases.
Could you please send me the following:
Best, Erica
Thank you for a quick reply! I am using an old version of DoubletDecon, I need to update it to see if the problem exists on the newer version or not. I will let you know.
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
packageVersion("Seurat") [1] ‘3.9.9.9010’
Dear Erica, After the update, there is no error.
Thanks a lot, Regards, Rahul
Dear Authors,
Thanks for creating such a useful tool!
I am trying to use this tool with processed data from Seurat object. However, in the Improved_Seurat_Pre_Process I am getting an error. I will be grateful, if you could suggest what might went wrong.
regards, Rahul
newFiles = Improved_Seurat_Pre_Process(sto_wt.dataset, num_genes=50, write_files=TRUE)
Error: Problem with
filter()
input..1
. x object 'avg_logFC' not found i Input..1
istop_n_rank(num_genes, avg_logFC)
. i The error occurred in group 1: cluster = "0". Runrlang::last_error()
to see where the error occurred.