Open abigailelliot26 opened 3 years ago
Hi,
My first thought was that I didn't include this species in my internal tables, but it does look like I have it there:
SpeciesName KEGGID SpeciesAbbr NCBIID Danio rerio. T01004 dre 7955
May I ask what species identifier you are using as the 'species' parameter?
Best, Erica
Aha, sorry, I didn't have "Danio" capitalised - it works now!
Based upon previous exploration of the data, I suspect that some cells with high cell cycle related gene expression are being called as doublets (likely because I have 2 or 3 different clusters that are high in cell cycle genes). But when I set removeCC = TRUE I get the following error:
Error in if (IDtype > 0) { : argument is of length zero
my species is danio rerio