Closed serbinsh closed 9 years ago
Just to show it works with a short path:
+------------------------------------------------------------+
| Input namelist filename is ED2IN
|
| Single process execution on INITIAL run.
+------------------------------------------------------------+
=> Generating the land/sea mask.
/data/Data/Model_Data/ED2data/ED2drivers/EDI/oge2OLD/OGE2_HEADER
-> Getting file: /data/Data/Model_Data/ED2data/ED2drivers/EDI/oge2OLD/OGE2_30N120W.h5...
-> Getting file: /data/Data/Model_Data/ED2data/ED2drivers/EDI/oge2OLD/OGE2_30N090W.h5...
+ Work allocation, node 1;
+ Polygon array allocation, node 1;
+ Memory successfully allocated on none 1;
[+] Load_Ed_Ecosystem_Params...
[+] Checking for XML config...
============================================
Counting PFT(s) in XML: config.xml
Found 3 PFT tags
MAXPFT = 11
Opening ED2 XML Config fileconfig.xml
EXTERN READ FROM FILE :: 0
MISC READ FROM FILE :: 0
ED_MISC READ FROM FILE :: 1
PFT's READ FROM FILE :: 3
Reading pft SLA= 42.804468
Reading pft leaf_trans_vis= 0.103909
Reading pft leaf_trans_nir= 0.305167
Reading pft leaf_reflect_vis= 0.104914
Reading pft leaf_reflect_nir= 0.155069
Reading pft Vm0= 56.371743
Reading pft q= 0.636280
Reading pft plant_min_temp= -80.000000
Reading pft stomatal_slope= 6.157351
Reading pft growth_resp_factor= 0.350008
Reading pft r_fract= 0.310811
Reading pft dark_respiration_factor= 0.015000
Reading pft mort2= 19.933670
Reading pft quantum_efficiency= 0.057312
Reading pft root_turnover_rate= 1.286510
Reading pft storage_turnover_rate= 0.000000
Reading pft root_respiration_factor= 1.398307
Reading pft water_conductance= 600.000000
1 9 temperate.Early_Hardwood.optics SLA: 42.8044662
1 9 temperate.Early_Hardwood.optics Vm0: 56.3717422
1 9 temperate.Early_Hardwood.optics quantum_eff.: 5.73122762E-02
1 9 temperate.Early_Hardwood.optics Stomatal Slope: 6.15735054
1 9 temperate.Early_Hardwood.optics Rd0: 0.00000000
1 9 temperate.Early_Hardwood.optics root_respiration_factor: 1.39830673
1 9 temperate.Early_Hardwood.optics clumping_factor: 0.83999999999999997
1 9 temperate.Early_Hardwood.optics leaf_reflect_vis: 0.10491382275358800
1 9 temperate.Early_Hardwood.optics leaf_reflect_nir: 0.15506939151906399
1 9 temperate.Early_Hardwood.optics leaf_trans_vis: 0.10390858307248001
1 9 temperate.Early_Hardwood.optics leaf_trans_nir: 0.30516712416429098
...
module ll_module
type ll_type
character(32) :: LL_ID
character(32) :: TAG
character(32) :: ID
character(1),dimension(:),pointer :: VALUE
! real(8),dimension(:),pointer :: row
type(ll_type),pointer :: NEXT_LL
type(ll_type),pointer :: FIRST_TAG
type(ll_type),pointer :: NEXT_TAG
type(ll_type),pointer :: UP_TAG
type(ll_type),pointer :: DOWN_TAG
type(ll_type),pointer :: FIRST_ID
type(ll_type),pointer :: NEXT_ID
type(ll_type),pointer :: NEXT_PID
end type ll_type
type(ll_type),pointer :: LL_ROOT
type(ll_type),pointer :: THIS,THISTEMP,THISTMP1
logical(4) :: INITIALIZED=.false.
logical(4) :: TCASESENSITIVE=.true.
I think it may be this bit. Changing LL_ID, TAG, and ID to great than 32
@serbinsh this is the same bug in ED/src/utils/libxml2f90.f90_pp.f90 that we've fixed a million times (and which is FINALLY checked intp the mainline!). You should just be able to copy the mainline version of that file and everything should work.
Quickly checking, I think, but am not completely certain, that this actually might be an issue with the compiler. I just remember that at a certain point I was having difficulties running on geo there were some issues with some parts of the ED2 code was cut in the middle. If that is the case, I think there is a compiler flag you can use, but aside from that I don't think there is an easy answer.
On Wed, Jun 24, 2015 at 3:22 PM, Shawn P. Serbin notifications@github.com wrote:
module ll_module type ll_type character(32) :: LL_ID character(32) :: TAG character(32) :: ID character(1),dimension(:),pointer :: VALUE ! real(8),dimension(:),pointer :: row type(ll_type),pointer :: NEXT_LL type(ll_type),pointer :: FIRST_TAG type(ll_type),pointer :: NEXT_TAG type(ll_type),pointer :: UP_TAG type(ll_type),pointer :: DOWN_TAG type(ll_type),pointer :: FIRST_ID type(ll_type),pointer :: NEXT_ID type(ll_type),pointer :: NEXT_PID end type ll_type
type(ll_type),pointer :: LL_ROOT type(ll_type),pointer :: THIS,THISTEMP,THISTMP1
logical(4) :: INITIALIZED=.false. logical(4) :: TCASESENSITIVE=.true.
I think it may be this bit. Changing LL_ID, TAG, and ID to great than 32
— Reply to this email directly or view it on GitHub https://github.com/EDmodel/ED2/issues/90#issuecomment-114985757.
@mdietze
Done.
Any reason we leave TAG and ID at a 32 character limit? I guess it may be unlikely to have such a large
@Viskari I think it is the character limit issue that, as @mdietze has said, we have fixed it a million times. I am recompiling now and testing. I think it will work OK now
Fixed.
@serbinsh there's no reason to leave TAG at 32 char. As you note, this isn't pressing because we don't have any tags that are longer than this
I am hitting an issue using an ED2 version I was able to run a few years back. I am calling this revision number 81 ( @rgknox edition). This is the version I ran the initial runs looking at tweaking optical parameters, based on some modifications Ryan had made to the code. I am trying to run this version again on our new server but have run into a problem when loading the XML config with options set by PEcAn. Basically the issue is with the path length. If I set NL%IEDCNFGF = 'config.xml' then ED2 will load it and run, but if I use the full path (/data/sserbin/Modeling/ED2_Modeling/US-WCr/PEcAn.US-WCr/ED2.r81.run/pecan/run/SA-median/config.xml) for example it will error out with:
I assume there is a spot where I can tweak the character length for the path, is that correct? I would just like to get this running so I can compare with recent tweaks to the ED2 model.
@mdietze @Viskari