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EESI / themetagenomics

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Error #9

Open EOMAK91 opened 4 years ago

EOMAK91 commented 4 years ago

Hi everyone.

I'm trying to use themetagenomics package and when I try to run the following function

system.time({ tmp <- tempdir() download_ref(tmp,reference='silva_ko', overwrite=FALSE) FUNCTIONS <- predict(ps, reference='silva_ko', reference_path=tmp, cn_normalize=TRUE, sample_normalize=FALSE, scalar=100) })

I get the following error:

Error in utils::download.file(sprintf("https://gitlab.com/sw1/themetagenomics_data/raw/master/%s", : cannot open URL 'https://gitlab.com/sw1/themetagenomics_data/raw/master/t4f_ref_profiles.rds'

if it helps this is the Traceback

utils::download.file(sprintf("https://gitlab.com/sw1/themetagenomics_data/raw/master/%s", fn), destfile = file.path(destination, fn), method = "auto", mode = "wb", quiet = !verbose) 4. withCallingHandlers(expr, warning = function(w) invokeRestart("muffleWarning")) 3. suppressWarnings(utils::download.file(sprintf("https://gitlab.com/sw1/themetagenomics_data/raw/master/%s", fn), destfile = file.path(destination, fn), method = "auto", mode = "wb", quiet = !verbose)) 2. download_ref(tmp, reference = "silva_ko", overwrite = FALSE) 1. system.time({ tmp <- tempdir() download_ref(tmp, reference = "silva_ko", overwrite = FALSE) FUNCTIONS <- predict(ps, reference = "silva_ko", reference_path = tmp, ...

Any suggestions??