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EESSI / software-layer

Software layer of the EESSI project
https://eessi.github.io/docs/software_layer
GNU General Public License v2.0
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{2023.06}[foss/2023a] SAMtools v1.18 #549

Closed Neves-P closed 2 months ago

Neves-P commented 2 months ago

Please do not merge this PR!

This is a test PR to see how building SAMtools v 1.18 goes. I plan to do a live demo of the build -> deploy workflow to EESSI with the bot on the EasyBuild user meeting on 26/04/2024. As such, I will close this PR even if SAMtools successfully builds for all architectures so that I can repeat the process then.

eessi-bot-aws[bot] commented 2 months ago

Instance eessi-bot-mc-aws is configured to build:

eessi-bot-aws[bot] commented 2 months ago

Instance eessi-bot-mc-azure is configured to build:

boegel commented 2 months ago

@Neves-P If you want to play safe, you could close the PR already, but continue to trigger builds with the bot, which will probably work

Neves-P commented 2 months ago

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic bot: build repo:eessi.io-2023.06-software arch:x86_64/generic

eessi-bot-aws[bot] commented 2 months ago
Updates by the bot instance eessi-bot-mc-aws (click for details) - received bot command `build repo:eessi.io-2023.06-software arch:aarch64/generic` from `Neves-P` - expanded format: `build repository:eessi.io-2023.06-software architecture:aarch64/generic` - received bot command `build repo:eessi.io-2023.06-software arch:x86_64/generic` from `Neves-P` - expanded format: `build repository:eessi.io-2023.06-software architecture:x86_64/generic` - handling command `build repository:eessi.io-2023.06-software architecture:aarch64/generic` resulted in: - submitted job `9716`, for details & status see https://github.com/EESSI/software-layer/pull/549#issuecomment-2068107731 - handling command `build repository:eessi.io-2023.06-software architecture:x86_64/generic` resulted in: - submitted job `9717`, for details & status see https://github.com/EESSI/software-layer/pull/549#issuecomment-2068107832
eessi-bot-aws[bot] commented 2 months ago
Updates by the bot instance eessi-bot-mc-azure (click for details) - account `Neves-P` has NO permission to send commands to the bot
eessi-bot-aws[bot] commented 2 months ago
New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_549/9716 date job status comment
Apr 21 16:01:59 UTC 2024 submitted job id 9716 awaits release by job manager
Apr 21 16:02:34 UTC 2024 released job awaits launch by Slurm scheduler
Apr 21 17:10:15 UTC 2024 running job 9716 is running
Apr 21 17:20:25 UTC 2024 finished
:grin: SUCCESS (click triangle for details)
Details
:white_check_mark: job output file slurm-9716.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching FAILED:
:white_check_mark: no message matching required modules missing:
:white_check_mark: found message(s) matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-generic-1713719446.tar.gzsize: 1 MiB (1806473 bytes)
entries: 123
modules under 2023.06/software/linux/aarch64/generic/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under 2023.06/software/linux/aarch64/generic/software
SAMtools/1.18-GCC-12.3.0
other under 2023.06/software/linux/aarch64/generic
no other files in tarball
Apr 21 17:20:25 UTC 2024 test result
:grin: SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
:white_check_mark: job output file slurm-9716.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case
eessi-bot-aws[bot] commented 2 months ago
New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_549/9717 date job status comment
Apr 21 16:02:03 UTC 2024 submitted job id 9717 awaits release by job manager
Apr 21 16:02:36 UTC 2024 released job awaits launch by Slurm scheduler
Apr 21 16:07:38 UTC 2024 running job 9717 is running
Apr 21 16:23:53 UTC 2024 finished
:grin: SUCCESS (click triangle for details)
Details
:white_check_mark: job output file slurm-9717.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching FAILED:
:white_check_mark: no message matching required modules missing:
:white_check_mark: found message(s) matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-generic-1713715708.tar.gzsize: 1 MiB (1859473 bytes)
entries: 123
modules under _2023.06/software/linux/x8664/generic/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under _2023.06/software/linux/x8664/generic/software
SAMtools/1.18-GCC-12.3.0
other under _2023.06/software/linux/x8664/generic
no other files in tarball
Apr 21 16:23:53 UTC 2024 test result
:grin: SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
:white_check_mark: job output file slurm-9717.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case
Neves-P commented 2 months ago

@Neves-P If you want to play safe, you could close the PR already, but continue to trigger builds with the bot, which will probably work

Didn't think of that, but good idea, thanks!

boegel commented 2 months ago

FYI: There's a problem currently with the neoverse-n1 partition, which is also used for aarch64-generic

Neves-P commented 2 months ago

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot-aws[bot] commented 2 months ago
Updates by the bot instance eessi-bot-mc-aws (click for details) - received bot command `build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1` from `Neves-P` - expanded format: `build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1` - received bot command `build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2` from `Neves-P` - expanded format: `build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2` - received bot command `build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3` from `Neves-P` - expanded format: `build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3` - received bot command `build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell` from `Neves-P` - expanded format: `build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell` - received bot command `build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512` from `Neves-P` - expanded format: `build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512` - handling command `build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1` resulted in: - submitted job `9718`, for details & status see https://github.com/EESSI/software-layer/pull/549#issuecomment-2068125375 - handling command `build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2` resulted in: - submitted job `9719`, for details & status see https://github.com/EESSI/software-layer/pull/549#issuecomment-2068125387 - handling command `build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3` resulted in: - submitted job `9720`, for details & status see https://github.com/EESSI/software-layer/pull/549#issuecomment-2068125406 - handling command `build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell` resulted in: - submitted job `9721`, for details & status see https://github.com/EESSI/software-layer/pull/549#issuecomment-2068125423 - handling command `build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512` resulted in: - submitted job `9722`, for details & status see https://github.com/EESSI/software-layer/pull/549#issuecomment-2068125434
eessi-bot-aws[bot] commented 2 months ago
Updates by the bot instance eessi-bot-mc-azure (click for details) - account `Neves-P` has NO permission to send commands to the bot
eessi-bot-aws[bot] commented 2 months ago
New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_549/9718 date job status comment
Apr 21 16:25:49 UTC 2024 submitted job id 9718 awaits release by job manager
Apr 21 16:25:56 UTC 2024 released job awaits launch by Slurm scheduler
Apr 21 16:31:05 UTC 2024 running job 9718 is running
Apr 21 16:37:37 UTC 2024 finished
:grin: SUCCESS (click triangle for details)
Details
:white_check_mark: job output file slurm-9718.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching FAILED:
:white_check_mark: no message matching required modules missing:
:white_check_mark: found message(s) matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1713717074.tar.gzsize: 1 MiB (1819602 bytes)
entries: 123
modules under _2023.06/software/linux/aarch64/neoversev1/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under _2023.06/software/linux/aarch64/neoversev1/software
SAMtools/1.18-GCC-12.3.0
other under _2023.06/software/linux/aarch64/neoversev1
no other files in tarball
Apr 21 16:37:37 UTC 2024 test result
:grin: SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
:white_check_mark: job output file slurm-9718.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case
eessi-bot-aws[bot] commented 2 months ago
New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_549/9719 date job status comment
Apr 21 16:25:53 UTC 2024 submitted job id 9719 awaits release by job manager
Apr 21 16:25:57 UTC 2024 released job awaits launch by Slurm scheduler
Apr 21 16:31:07 UTC 2024 running job 9719 is running
Apr 21 16:50:11 UTC 2024 finished
:grin: SUCCESS (click triangle for details)
Details
:white_check_mark: job output file slurm-9719.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching FAILED:
:white_check_mark: no message matching required modules missing:
:white_check_mark: found message(s) matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1713717111.tar.gzsize: 1 MiB (1899207 bytes)
entries: 123
modules under _2023.06/software/linux/x8664/amd/zen2/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under _2023.06/software/linux/x8664/amd/zen2/software
SAMtools/1.18-GCC-12.3.0
other under _2023.06/software/linux/x8664/amd/zen2
no other files in tarball
Apr 21 16:50:11 UTC 2024 test result
:grin: SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
:white_check_mark: job output file slurm-9719.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case
eessi-bot-aws[bot] commented 2 months ago
New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_549/9720 date job status comment
Apr 21 16:25:56 UTC 2024 submitted job id 9720 awaits release by job manager
Apr 21 16:26:59 UTC 2024 released job awaits launch by Slurm scheduler
Apr 21 16:31:09 UTC 2024 running job 9720 is running
Apr 21 16:42:56 UTC 2024 finished
:grin: SUCCESS (click triangle for details)
Details
:white_check_mark: job output file slurm-9720.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching FAILED:
:white_check_mark: no message matching required modules missing:
:white_check_mark: found message(s) matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1713717097.tar.gzsize: 1 MiB (1893643 bytes)
entries: 123
modules under _2023.06/software/linux/x8664/amd/zen3/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under _2023.06/software/linux/x8664/amd/zen3/software
SAMtools/1.18-GCC-12.3.0
other under _2023.06/software/linux/x8664/amd/zen3
no other files in tarball
Apr 21 16:42:56 UTC 2024 test result
:grin: SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
:white_check_mark: job output file slurm-9720.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case
eessi-bot-aws[bot] commented 2 months ago
New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_549/9721 date job status comment
Apr 21 16:26:00 UTC 2024 submitted job id 9721 awaits release by job manager
Apr 21 16:27:01 UTC 2024 released job awaits launch by Slurm scheduler
Apr 21 16:32:13 UTC 2024 running job 9721 is running
Apr 21 16:48:09 UTC 2024 finished
:grin: SUCCESS (click triangle for details)
Details
:white_check_mark: job output file slurm-9721.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching FAILED:
:white_check_mark: no message matching required modules missing:
:white_check_mark: found message(s) matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-haswell-1713717142.tar.gzsize: 1 MiB (1891434 bytes)
entries: 123
modules under _2023.06/software/linux/x8664/intel/haswell/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under _2023.06/software/linux/x8664/intel/haswell/software
SAMtools/1.18-GCC-12.3.0
other under _2023.06/software/linux/x8664/intel/haswell
no other files in tarball
Apr 21 16:48:09 UTC 2024 test result
:grin: SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
:white_check_mark: job output file slurm-9721.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case
eessi-bot-aws[bot] commented 2 months ago
New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_549/9722 date job status comment
Apr 21 16:26:04 UTC 2024 submitted job id 9722 awaits release by job manager
Apr 21 16:27:03 UTC 2024 released job awaits launch by Slurm scheduler
Apr 21 16:32:15 UTC 2024 running job 9722 is running
Apr 21 16:46:04 UTC 2024 finished
:grin: SUCCESS (click triangle for details)
Details
:white_check_mark: job output file slurm-9722.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching FAILED:
:white_check_mark: no message matching required modules missing:
:white_check_mark: found message(s) matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1713717124.tar.gzsize: 1 MiB (1888166 bytes)
entries: 123
modules under _2023.06/software/linux/x86_64/intel/skylakeavx512/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under _2023.06/software/linux/x86_64/intel/skylakeavx512/software
SAMtools/1.18-GCC-12.3.0
other under _2023.06/software/linux/x86_64/intel/skylakeavx512
no other files in tarball
Apr 21 16:46:05 UTC 2024 test result
:grin: SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
:white_check_mark: job output file slurm-9722.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case
Neves-P commented 2 months ago

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1

eessi-bot-aws[bot] commented 2 months ago
Updates by the bot instance eessi-bot-mc-aws (click for details) - received bot command `build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1` from `Neves-P` - expanded format: `build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1` - handling command `build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1` resulted in: - submitted job `9725`, for details & status see https://github.com/EESSI/software-layer/pull/549#issuecomment-2068193284
eessi-bot-aws[bot] commented 2 months ago
Updates by the bot instance eessi-bot-mc-azure (click for details) - account `Neves-P` has NO permission to send commands to the bot
eessi-bot-aws[bot] commented 2 months ago
New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_549/9725 date job status comment
Apr 21 20:46:49 UTC 2024 submitted job id 9725 awaits release by job manager
Apr 21 20:47:44 UTC 2024 released job awaits launch by Slurm scheduler
Apr 22 08:57:44 UTC 2024 running job 9725 is running
Apr 22 09:07:55 UTC 2024 finished
:grin: SUCCESS (click triangle for details)
Details
:white_check_mark: job output file slurm-9725.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching FAILED:
:white_check_mark: no message matching required modules missing:
:white_check_mark: found message(s) matching No missing installations
:white_check_mark: found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_n1-1713776300.tar.gzsize: 1 MiB (1796525 bytes)
entries: 123
modules under _2023.06/software/linux/aarch64/neoversen1/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under _2023.06/software/linux/aarch64/neoversen1/software
SAMtools/1.18-GCC-12.3.0
other under _2023.06/software/linux/aarch64/neoversen1
no other files in tarball
Apr 22 09:07:55 UTC 2024 test result
:grin: SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
:white_check_mark: job output file slurm-9725.out
:white_check_mark: no message matching ERROR:
:white_check_mark: no message matching [\s*FAILED\s*].*Ran .* test case