EI-CoreBioinformatics / CoassemblyPipeline

Snakemake pipeline for genome coassembly
MIT License
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Chunk megablastn jobs #3

Closed jamiemcg closed 1 year ago

jamiemcg commented 1 year ago

Since updating to newer NCBI NT database, the megablastn jobs for blobtools are taking significantly longer.

Consider chunking blast jobs. A lazy way to do this would be to divide the assembly into a user/config specified chunks