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EI-CoreBioinformatics / CoassemblyPipeline

Snakemake pipeline for genome coassembly
MIT License
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Annotate rRNA genes on all contigs/scaffolds #5

Closed jamiemcg closed 1 year ago

jamiemcg commented 1 year ago

Currently barrnap is run to annotate rRNA genes only on contigs/scaffolds >= 1000 bp

In some cases there are short contigs that have partial rRNA genes that are not picked up here.

Edit the barrnap rule to run on scaffolds.fasta instead of scaffolds.1000.fasta