QC module too dependent on Module 1 - Filenames

EI-CoreBioinformatics / DToL_asm_hifi

Assembly (Hifi), Breaking (10X), Scaffolding (10X) and Polishing (10X) pipeline

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QC module too dependent on Module 1 - Filenames #12

Closed garethlin closed 3 years ago

garethlin commented 3 years ago

QC module only processes the 'all contains' assembly correctly if it is named as it would be when created by assembly module i.e. ends in ".all.contgs.fasta" .

This is snot useful for using the QC module on assemblies not produce Dwight this pipeline.

Better to designate assemblies as "primary' or 'all contains' in the input file.

garethlin commented 3 years ago

Fixed in commit c2295b0a627280676153bfe4110fa66200e1e724