search

EI-CoreBioinformatics / bgrrl

0 stars 0 forks source link

qualimap failure in latest qaa-container: issue with system fonts? #32

Closed cschu closed 5 years ago

cschu commented 5 years ago

Reported by Gaetan Thilliez (QIB): qualimap fails with

Writing HTML report... Exception in thread "main" java.lang.Error: Probable fatal error:No fonts found.

This can be fixed by adding the following to the qaa singularity container: https://catamaranframework.wordpress.com/2012/12/21/solved-java-lang-error-probable-fatal-errorno-fonts-found/

(additional installed fontconfigure as recommended on StackExchange)

cschu commented 5 years ago

Fixed upon issue creation.