search

EI-CoreBioinformatics / eirepeat

eirepeat - EI Repeat Identification pipeline
GNU General Public License v3.0
7 stars 2 forks source link

local running errors ？ #3

Open zhangwenda0518 opened 1 year ago

zhangwenda0518 commented 1 year ago

Hello, author, I am very interested in the repetitive sequence annotation tool ----eirepeat developed by you. However, during operation, I encountered the following error, which seems to be a cluster problem. However, I am currently working in an independent server, and I have never had the experience of cluster delivery. Can you give me some help? I have not been able to "eirepeat configure --help"."eirepeat run --help" to see the solution.

image

image

gemygk commented 1 year ago

Hi @zhangwenda0518

Thanks for getting in touch.

eirepeat is currently written to support running on the HPC cluster (especially SLURM scheduler) and therefore it is not supported for a local run.

This is because depending on the species you want to run the eirepeat pipeline, it would take weeks to run on a local machine rather than a few days on an HPC cluster.

I understand the need to run it locally, which is on my list of things to do. I will keep this issue open and let you know when I add the feature.

Thanks, Gemy