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EI-CoreBioinformatics / minos

The labyrinth king judges your gene models.
GNU Lesser General Public License v3.0
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Allow prebuilt blast databases in addition to raw protein sequences #2

Open cschu opened 5 years ago

swarbred commented 4 years ago

@cschu cc @gemygk The documentation says

blastdb_prot (the latter might not be implemented)

I'm assuming this is probably not implemented currently, would be useful for the larger sp database especially when we support diamond (so one to bear in mind)

cschu commented 4 years ago

I was always under the impression that I implemented that, but the code doesn't really show any trace of that feature... Would this potentially come alongside "normal" blast runs?

swarbred commented 4 years ago

it would just be an alternative route to the "normal" seq_prot blast runs, so post blast treated in the same way and feeding into the hom_acov_score used in the classification