memory (and potentially cores) not read from hpc_config

EI-CoreBioinformatics / minos

The labyrinth king judges your gene models.

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memory (and potentially cores) not read from hpc_config #25

Closed swarbred closed 4 years ago

swarbred commented 4 years ago

At least some rules don't appear to pick up memory and also possibly cores from the hpc config e.g.

  "busco_genome": {
    "partition": "ei-cb",
    "memory": "32768",
    "cores": "8",
    "J": "gmc_busco_genome"
  },

actually ran with the default

       26651790 swarbred           ei-cb      1     8         8G  COMPLETED  2020-04-28T21:59:29  2020-04-28T21:59:30            0:09              t128n32 busco_genome_GMC_GMC

cschu commented 4 years ago

Hi @swarbred , that is curious -- I assume this is a custom hpc_config.json that you use with --hpc_config?

cschu commented 4 years ago

This should be resolved now in 1.0.3.

swarbred commented 4 years ago

Yep works for me

cschu commented 4 years ago

Resolved in 989e8b2