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EI-CoreBioinformatics / portcullis

Splice junction analysis and filtering from BAM files
https://ei-corebioinformatics.github.io/portcullis/
GNU General Public License v3.0
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Counts of R1 and R2 for each strand #30

Closed maplesond closed 6 years ago

maplesond commented 6 years ago

For strand analysis it is helpful to know how many R1s hit the + or - strand and the same for R2s. This would make portcullis really useful for validating the strand specific mode used in the aligner and transcript assembler.

maplesond commented 6 years ago

This has been added into the develop branch. We also determine what strand protocol was used on the RNA-Seq data.