EI-CoreBioinformatics / portcullis

Splice junction analysis and filtering from BAM files
https://ei-corebioinformatics.github.io/portcullis/
GNU General Public License v3.0
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Broken junctools convert due to changes in the tab format #31

Closed lucventurini closed 6 years ago

lucventurini commented 6 years ago

In the latest version(s?), Portcullis has added four metrics to the TAB file ("nbr?(pos|neg)"). As the indexing in the "junction" module is by position, rather than name, this breaks the parsing and therefore the conversion script.

maplesond commented 6 years ago

Thanks Luca. I'll take a look tomorrow.

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-------- Original message -------- From: Luca Venturini notifications@github.com Date: 15/02/2018 13:57 (GMT+00:00) To: maplesond/portcullis portcullis@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [maplesond/portcullis] Broken junctools convert due to changes in the tab format (#31)

In the latest version(s?), Portcullis has added four metrics to the TAB file ("nbr?(pos|neg)"). As the indexing in the "junction" module is by position, rather than name, this breaks the parsing and therefore the conversion script.

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maplesond commented 6 years ago

Fixed in develop branch.