EI-CoreBioinformatics / reat

Robust Eukaryotic Annotation Toolkit
https://reat.readthedocs.io/en/latest/
MIT License
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Integrates xspecies results using mikado #1

Closed ljyanesm closed 3 years ago

ljyanesm commented 3 years ago

Allows integration of the homology derived models using mikado

This integration requires using mikado's check-references, reference-update, only-reference-update options, a custom scoring file that makes use of external metrics and any other custom configuration parameters the user might want to apply from a file.

Similarly, a user can optionally incorporate a valid set of junctions to validate and score splicing or models with UTRs which will extend UTRs of the homology derived models when possible.