If the gold silver or bronze gff files are empty because no models with classified in that category then at the point of generating the hints files from these inputs the gff_to_aug_hints script errors
Traceback (most recent call last): File "/ei/software/testing/reat/dev_prediction_module/x86_64/bin/gff_to_aug_hints", line 95, in <module> main() File "/ei/software/testing/reat/dev_prediction_module/x86_64/bin/gff_to_aug_hints", line 91, in main transform_gff_to_hint(gff_file, args.order, args.priority_hint, args.source_hint, args.source, args.type) File "/ei/software/testing/reat/dev_prediction_module/x86_64/bin/gff_to_aug_hints", line 72, in transform_gff_to_hint print_features(exons, introns, pre_seqid, source_gff, feature_type, pre_score, pre_strand, pre_phase, File "/ei/software/testing/reat/dev_prediction_module/x86_64/bin/gff_to_aug_hints", line 11, in print_features print(f"{seqid}\t{source}\t{ftype}part\t{exons[0]}\t{score}\t{strand}\t{phase}\t{attributes}") IndexError: list index out of range
If the gold silver or bronze gff files are empty because no models with classified in that category then at the point of generating the hints files from these inputs the gff_to_aug_hints script errors
Traceback (most recent call last): File "/ei/software/testing/reat/dev_prediction_module/x86_64/bin/gff_to_aug_hints", line 95, in <module> main() File "/ei/software/testing/reat/dev_prediction_module/x86_64/bin/gff_to_aug_hints", line 91, in main transform_gff_to_hint(gff_file, args.order, args.priority_hint, args.source_hint, args.source, args.type) File "/ei/software/testing/reat/dev_prediction_module/x86_64/bin/gff_to_aug_hints", line 72, in transform_gff_to_hint print_features(exons, introns, pre_seqid, source_gff, feature_type, pre_score, pre_strand, pre_phase, File "/ei/software/testing/reat/dev_prediction_module/x86_64/bin/gff_to_aug_hints", line 11, in print_features print(f"{seqid}\t{source}\t{ftype}part\t{exons[0]}\t{score}\t{strand}\t{phase}\t{attributes}") IndexError: list index out of range