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EI-CoreBioinformatics / reat

Robust Eukaryotic Annotation Toolkit
https://reat.readthedocs.io/en/latest/
MIT License
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Error providing external augustus config #23

Closed swarbred closed 2 years ago

swarbred commented 2 years ago

Error using --extrinsic_config my_aug.cfg

Error Traceback (most recent call last): File "/ei/software/cb/reat/dev-issue21/x86_64/bin/reat", line 8, in <module> sys.exit(main()) File "/ei/software/cb/reat/dev-issue21/x86_64/lib/python3.9/site-packages/annotation/__main__.py", line 604, in main rc = prediction_module(cli_arguments) File "/ei/software/cb/reat/dev-issue21/x86_64/lib/python3.9/site-packages/annotation/prediction.py", line 371, in prediction_module cromwell_inputs = combine_arguments_prediction(cli_arguments) File "/ei/software/cb/reat/dev-issue21/x86_64/lib/python3.9/site-packages/annotation/prediction.py", line 49, in combine_arguments_prediction cromwell_inputs['ei_prediction.extrinsic_config'] = cli_arguments.extrinsic_config.name AttributeError: 'list' object has no attribute 'name'