CHIPS, or Cellular and Hemodynamic Image Processing Suite, is an open-source MATLAB toolbox designed to analyse functional images of cells and blood vessels, primarily from two-photon microscopy. Please see the README file, which is displayed at the bottom of this page, for more information.
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CellScan assumes 3D ROI mask, when nROIs == nFrames #6
Because of the way CellScan distingushes 2p5D from 3D masks. Ideally, the is3D property could be manually set if necssary.
This is an edge case, but poses problems to some users.