Open HagaiHargil opened 3 years ago
Do we still need to have a CalibrationPixelSize
file for each obj/mag?
It's for each objective, yes, because that's how you factor in the FOV in um, I believe. The zoom\mag part is done automatically, so it's basically a single file per lens, and the user has to manually choose the calibration file. A wrapper script can take care of that, assuming the objective is usually the same.
Resolves #2.
This PR introduces support for TIFs generated with newer files - either V5 or V2016+. This means that users may now use the built in
SCIM_Tif
class when reading SI TIFs instead of manually constructing them withRawImageDummy
.I have an SI5 TIF ready for testing, and as you see I added it to the tests file, but I'm not sure how you would like to include it "officially". I will also add a SI2020 file to the mix.