ELEKTRONN elektronn3 issues

ELEKTRONN / elektronn3

A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data

MIT License

161 stars 26 forks source link

issues

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Input normalization

#54 SebastienTs opened 11 months ago
0
Elektronn3

#53 SebDBI closed 11 months ago
0
UNet Implementation details

#52 SebastienTs opened 11 months ago
2
Sparse annotations for training

#51 SebastienTs opened 11 months ago
2
How to train the model with custom datasets

#50 Elmiar0642 opened 1 year ago
1
Error with 3D convolution on custom Kernels

#49 Elmiar0642 closed 1 year ago
2
Trainer scripts and metrics for GNN training

#47 hash-ir closed 2 years ago
0
Merge phil_convpoint into syconn

#46 pschubert closed 3 years ago
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Knossos labels kzip

#45 riegerfr closed 3 years ago
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Update requirements.txt

#44 flmuk closed 3 years ago
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noise to zero_like, not empty_like

#43 riegerfr closed 4 years ago
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introduced handling for target = None in RandomRotate2d

#42 riegerfr closed 4 years ago
1
implemented caching for KnossosRawData

#41 riegerfr closed 4 years ago
1
Various improvements by @Optiligence and @mdraw

#40 mdraw closed 4 years ago
0
Import error when running in SyConn environment

#39 AldoCP closed 4 years ago
1
Caconi ensemble

#38 caconi closed 3 years ago
0
Missing assignment to mode in train_unet_neurodata.py

#37 dmankins closed 5 years ago
1
train_unet_neurodata.py default seed is a seed of 0, not a random seed

#36 dmankins closed 4 years ago
2
Offline validation/evaluation of trained models

#35 mdraw closed 4 years ago
1
Inference example script

#34 mdraw closed 4 years ago
0
High-level documentation

#33 mdraw opened 5 years ago
0
NaN losses when training with torch.nn.CrossEntropyLoss

#32 mdraw closed 5 years ago
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correct metrics with ignore class

#31 Optiligence closed 4 years ago
1
don’t allocate complete in- and output on the gpu

#30 Optiligence closed 5 years ago
0
adjust output shape as multiple of tile shape

#29 Optiligence closed 5 years ago
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Reproducibility

#28 mdraw closed 5 years ago
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fix metrics for i.e. negative gt batches

#27 Optiligence closed 5 years ago
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ElasticTransform and RandomGaussianBlur transforms

#26 mdraw closed 5 years ago
1
Add Predictor, TripletNet, RandomFlip, 2D FCN

#25 pschubert closed 5 years ago
2
Enable automatic documentation build and hosting on readthedocs

#24 mdraw closed 6 years ago
0
New transforms API for datasets

#23 mdraw closed 6 years ago
0
Improve PatchCreator interface, add basic 2D training support

#22 mdraw closed 6 years ago
0
Automatic backup of training code and environment info (resolves #11)

#21 rasaxena closed 6 years ago
1
Ravil

#20 ravil-mobile closed 6 years ago
1
New data augmentation

#19 ravil-mobile closed 6 years ago
0
[WIP] Add local blur ("blob") augmentations

#18 mdraw closed 6 years ago
2
Large-scale prediction using trained models

#17 mdraw closed 5 years ago
1
readthedocs page with auto-generated API documentation

#16 mdraw closed 5 years ago
3
Docstrings and type information

#15 mdraw closed 5 years ago
1
Calculating and visualizing effective (empirical) receptive fields of network models

#14 mdraw closed 5 years ago
0
OOM when using the current PyTorch git master

#13 mdraw closed 6 years ago
2
Random HDF5 read errors

#12 mdraw closed 5 years ago
1
Back up training code to save_path for more reproducible experiments

#11 mdraw closed 6 years ago
2
"Invalid" targets with out-of-bounds elements

#10 mdraw closed 5 years ago
2
Add non-geometric augmentation methods

#9 mdraw closed 4 years ago
1
Plot overlay images to TensorBoard

#8 mdraw closed 6 years ago
0
Early stopping and dynamic learning rate reduction

#7 mdraw closed 5 years ago
1
Modularize and clean up StoppableTrainer

#6 mdraw closed 5 years ago
0
Support 2D data sets

#5 mdraw closed 5 years ago
1
Decide what to do with train.py

#4 mdraw closed 6 years ago
2