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ELELAB
/
cancermuts
Software for the automatic annotation of cancer mutations
GNU General Public License v3.0
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Replaces assertions when converting genomic coordinates
#202
mtiberti
closed
1 week ago
0
Assertion in genomic coordinate conversion makes cancermuts crash
#201
mtiberti
closed
1 week ago
1
fixes handling of ELM descriptions with comma
#200
mtiberti
closed
1 week ago
0
crash when trying to plot metatable with specific ELMs
#199
mtiberti
closed
1 week ago
0
Adds support for ELM implementation from `gget`
#198
mtiberti
closed
5 months ago
0
add support for `gget.elm` to supply ELM predictions
#197
mtiberti
closed
5 months ago
0
Updated database list
#196
katmeld
closed
5 months ago
0
Changed biopython function
#195
katmeld
closed
5 months ago
0
Change Biopython three_to_one to three_to_index
#194
katmeld
closed
5 months ago
0
Add genomic coordinates to sequence
#193
katmeld
opened
6 months ago
0
Adds mention to the Cancermuts web server to the README file
#192
mtiberti
closed
7 months ago
0
Add link to cancermuts online database to README
#191
mtiberti
closed
7 months ago
0
Files downloaded from web server don't have the right content
#190
mtiberti
closed
9 months ago
1
Prepares cancermuts website for prime time
#189
mtiberti
closed
9 months ago
0
Turns cancermuts webpage into cancermuts website
#188
mtiberti
closed
9 months ago
0
improves compatibility with plotting for partial metatables
#187
mtiberti
closed
10 months ago
0
`cancermuts.Table.plot_metatable` should support partial tables
#186
mtiberti
closed
10 months ago
0
Keep track and store relevant IDs as metadata when downloading mutations
#185
mtiberti
opened
10 months ago
0
make website and database compliant with licenses of our data sources
#184
mtiberti
opened
10 months ago
0
initial application
#183
a-estad
closed
10 months ago
0
Add preliminary version of web app for Cancermuts
#182
mtiberti
closed
10 months ago
0
Changed download and annotation of Uniprot ID/AC
#181
mtiberti
closed
1 year ago
0
Sequence download should prioritise Uniprot AC vs Uniprot ID
#180
mtiberti
closed
1 year ago
0
Adds handling of all-nan cases for `popmax` calculation in gnomAD
#179
mtiberti
closed
1 year ago
1
gnomAD fails when calculating `popmax` and all populations are `NaN`
#178
mtiberti
closed
1 year ago
1
The README file doesn't list all the supported annotations/databases
#177
mtiberti
closed
5 months ago
0
better handles cases with None REVEL score
#176
mtiberti
closed
1 year ago
0
REVEL retrieval crashes in some instances
#175
mtiberti
closed
1 year ago
1
added support for multiple REVEL value for each genomic mutation
#174
mtiberti
closed
1 year ago
0
REVEL retrieval crashes when multiple REVEL scores for a genomic mutations are present
#173
mtiberti
closed
1 year ago
0
Check for cosmic database file
#172
katmeld
closed
1 year ago
0
Changed default 'exclude_elm_classes'
#171
katmeld
closed
1 year ago
0
COSMIC crash with unsupported metadata
#170
katmeld
closed
1 year ago
0
COSMIC() crashes when no file is specified
#169
katmeld
closed
1 year ago
1
MobiDB API switch
#168
katmeld
closed
1 year ago
1
Crash when doing ELM predictions
#167
katmeld
closed
1 year ago
2
Fixes ELM support for plotting
#166
mtiberti
closed
1 year ago
0
Crash when plotting metatable
#165
mtiberti
closed
1 year ago
1
in GenomicMutation metadata, makes HGVS definition check stricter
#164
mtiberti
closed
1 year ago
0
Crash when trying to add genomic mutations for VHL
#163
mtiberti
closed
1 year ago
1
Addition of popmax allele freq. to gnomad annotations
#162
katmeld
closed
1 year ago
0
ELM accession number to metatable
#161
katmeld
closed
1 year ago
0
failure to retrieve UniProt sequence is not handled gracefully
#160
mtiberti
opened
1 year ago
0
Addition of genomic_mutations (metadata) for manual annotations
#159
katmeld
closed
1 year ago
0
Issues with MobiDB and API switch
#158
mtiberti
closed
1 year ago
0
Improves handling of gnomAD corner case in which no variant for gene is found
#157
mtiberti
closed
1 year ago
0
gNOMAD annotation crashes if no gNOMAD variants are available
#156
mtiberti
closed
1 year ago
0
Replaces `numpy` type aliases with Python types
#155
mtiberti
closed
1 year ago
0
Fixes handling of genes on X and Y chromosomes
#154
mtiberti
closed
1 year ago
0
`numpy` type aliases have been removed from recent numpy
#153
mtiberti
closed
1 year ago
1
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