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Import IL10 simple mode #206

Closed saulianskaitee closed 2 months ago

saulianskaitee commented 3 months ago

clinvar_gene: /data/user/shared_projects/mavisp/IL10/clinvar_gene clinvar: /data/user/shared_projects/mavisp/IL10/clinvar cancermuts: /data/user/shared_projects/mavisp/IL10/cancermuts cancermuts: /data/raw_data/computational_data/cancermuts_data/mavisp_others/il10/pancancer_clinvar_saturation/11082024 ptm mutatex: /data/user/shared_projects/mavisp/IL10/ptm/AF2_29-178/mutatex ptm naccess: /data/user/shared_projects/mavisp/IL10/ptm/AF2_29-178/naccess long_range: /data/user/shared_projects/mavisp/IL10/long_range/allosigma2/AF_29-178 mutatex: /data/raw_data/computational_data/mutatex_data/mavisp_others/il10/free/stability/mutatex_runs/AF_29-178/model_v4/saturation rosetta: /data/raw_data/computational_data/rosetta_data/mavisp_others/il10/free/AF_29-178/model_v2/ref2015_cartesian2020 rasp: /data/raw_data/computational_data/rasp_data/mavisp_others/il10/free/AF_29-178/model_v2

elenapapaleo commented 3 months ago

imported in: /data/user/shared_projects/mavisp/IL10/downstream_analysis/mavisp_csv/20082024

saulianskaitee commented 2 months ago

AlphaFold (complex): /data/raw_data/computational_data/alphafold_data/psn/il10/complexes/il10ra-il10rb/AF3_il10-il10ra-il10rb_1-178_1-578_1-325 local_interaction (mutateX): /data/raw_data/computational_data/mutatex_data/psn/il10/complexes/ IL10-IL10RA: /data/raw_data/computational_data/mutatex_data/psn/il10/complexes/il10_il10RA IL10-IL10RB: /data/raw_data/computational_data/mutatex_data/psn/il10/complexes/il10_il10RB il10-2_il10RA: /data/raw_data/computational_data/mutatex_data/psn/il10/complexes/il10-2_il10RA il10-il10: /data/raw_data/computational_data/mutatex_data/psn/il10/complexes/il10_il10

saulianskaitee commented 2 months ago

local_interaction (Rosetta): /data/raw_data/computational_data/rosetta_data/psn/il10/complexes/ IL10-IL10RA: /data/raw_data/computational_data/rosetta_data/psn/il10/complexes/il10_il10RA IL10-IL10RB: /data/raw_data/computational_data/rosetta_data/psn/il10/complexes/il10_il10RB il10-2_il10RA: /data/raw_data/computational_data/rosetta_data/psn/il10/complexes/il10-2_il10RA il10-il10: /data/raw_data/computational_data/rosetta_data/psn/il10/complexes/il10_il10

il10_il10RA - IL10 and IL10 receptor subunit A il10_il10RB - IL10 and IL10 receptor subunit B il10_il10 - dimer il10-2_il10RA - another monomer of IL10 and IL10 receptor subunit A

elenapapaleo commented 2 months ago

this has been imported in mavisp_data_saturation and the csv will be updated in the next batch