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ELELAB / mavisp_data_collection

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update import ARID3A #209

Closed kar0liina closed 2 months ago

kar0liina commented 2 months ago

denovo_phospo: /data/user/shared_projects/mavisp/ARID3A/denovo_phospho/

efoldmine: /data/user/shared_projects/mavisp/ARID3A/efoldmine/

long_range_saturation: /data/user/shared_projects/mavisp/ARID3A/long_range_saturation/allosigma2/

long_range_psn: /data/user/shared_projects/mavisp/ARID3A/simulations_analysis/free/2kk0_228-351/replicate1/CHARMM22star/md/8.psn/pyinteraph2/acPSN/full_traj/path_analysis/

cancermuts_saturation: /data/raw_data/computational_data/cancermuts_data/tf/arid3a/pancancer_clinvar_saturation/31052024

ptm_saturation: /data/user/shared_projects/mavisp/ARID3A/ptm.md/mutatex_saturation/ /data/user/shared_projects/mavisp/ARID3A/ptm.nmr/mutatex_saturation /data/user/shared_projects/mavisp/ARID3A/ptm/mutatex_binding_saturation/ARID3A_TP53BP1 /data/user/shared_projects/mavisp/ARID3A/ptm/mutatex_saturation /data/user/shared_projects/mavisp/ARID3A/ptm.csmd/mutatex_saturation /data/user/shared_projects/mavisp/ARID3A/ptm.cabsflex/mutatex_saturation

elenapapaleo commented 2 months ago

this is updated now in mavisp_data_saturation, I will create the corresponding CSV in a separate batch since it is one of those which will be released with its own publication