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ELELAB / mavisp_data_collection

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import NRG1 NDRG1 PER1, NF2, PMS2 (mutatex_ensemble), MLH1 and MSH6 (8.psn + path), TXN (100ns 500ns mutatex_ensemble) #211

Closed marnaudi closed 2 months ago

marnaudi commented 2 months ago

PMS2 (mutatex and rasp ensemble): mutatex: /data/raw_data/computational_data/mutatex_data/marinara/pms2/free/AF_607-862/model_v2/saturation_ensemble/

rasp: /data/raw_data/computational_data/rasp_data/marinara/pms2/free/AF_607-862/model_v2/saturation_ensemble/AF2_607-862/model_v2/

NRG1: cancermuts: /data/raw_data/computational_data/cancermuts_data/cosmic_tsg/NRG1/pancancer_clinvar_saturation/01092024/ mutatex:/data/raw_data/computational_data/mutatex_data/cosmic_tsg/nrg1/free/stability/mutatex_runs/AF_36-225/model_v3/saturation/Q02297_table/ rasp:/data/raw_data/computational_data/rasp_data/cosmic_tsg/nrg1/free/AF_36-225/model_v2/

NDRG1: cancemruts:/data/raw_data/computational_data/cancermuts_data/cosmic_tsg/NDRG1/pancancer_clinvar_saturation/01092024/ mutatex:/data/raw_data/computational_data/mutatex_data/cosmic_tsg/ndrg1/free/stability/mutatex_runs/AF_31-318/model_v3/saturation/Q92597_table/ rasp:/data/raw_data/computational_data/rasp_data/cosmic_tsg/ndrg1/free/AF_31-318/model_v2/

PER1: cancermuts:/data/raw_data/computational_data/cancermuts_data/cosmic_tsg/PER1/pancancer_clinvar_saturation/01092024/ mutatex:/data/raw_data/computational_data/mutatex_data/cosmic_tsg/per1/free/stability/mutatex_runs/AF_130-502/model_v3/saturation/O15534_table/ rasp:/data/raw_data/computational_data/rasp_data/cosmic_tsg/per1/free/AF_130-502/model_v2/

MLH1: MLH1/simulations_analysis/free/AF_501-756/model_v2/replicate1/CHARMM36/md/8.psn/pyinteraph2/acPSN/full_traj/path_analysis/ MLH1/simulations_analysis/mg_adp_bound/AF_1-341/model_v2/replicate1/CHARMM36/md/8.psn/pyinteraph2/acPSN/full_traj/path_analysis/

MSH6(it miss the big domain): MSH6/simulations_analysis/free/AF_89-124/replicate1/CHARMM36/md/8.psn/pyinteraph2/acPSN/full_traj/path_analysis/

NF2: cancermuts:/data/raw_data/computational_data/cancermuts_data/cosmic_tsg/PER1/pancancer_clinvar_saturation/04092024/ mutatex:/data/raw_data/computational_data/mutatex_data/cosmic_tsg/nf2/free/stability/mutatex_runs/AF_18-595/model_v3/saturation/P35240_table/ rasp:/data/raw_data/computational_data/rasp_data/cosmic_tsg/nf2/free/AF_18-595/model_v2/

TXN: mutatex: /data/raw_data/computational_data/mutatex_data/sno/txn/free/AF_1-105/saturation_ensemble/

elenapapaleo commented 2 months ago

all imported and will be part of the next batch of csv generation together with other entries