ELELAB / mavisp_data_collection

GNU General Public License v3.0
2 stars 0 forks source link

Import RB1, RHOH, RMI2, RSPO2 from automatization #217

Closed pablosanchezizquierdo closed 2 months ago

pablosanchezizquierdo commented 2 months ago

RB1: cancermuts: /data/raw_data/computational_data/cancermuts_data/cosmic_tsg/RB1/pancancer_clinvar_saturation/20092024

mutatex: /data/raw_data/computational_data/mutatex_data/cosmic_tsg/rb1/free/stability/mutatex_runs/AF_51-610/model_v4/saturation/P06400_table /data/raw_data/computational_data/mutatex_data/cosmic_tsg/rb1/free/stability/mutatex_runs/AF_642-792/model_v4/saturation/P06400_table

rasp: /data/raw_data/computational_data/rasp_data/cosmic_tsg/rb1/free/AF_51-610/model_v4 /data/raw_data/computational_data/rasp_data/cosmic_tsg/rb1/free/AF_642-792/model_v4

RHOH: cancermuts: /data/raw_data/computational_data/cancermuts_data/cosmic_tsg/RHOH/pancancer_clinvar_saturation/20092024

mutatex: /data/raw_data/computational_data/mutatex_data/cosmic_tsg/rhoh/free/stability/mutatex_runs/AF_1-191/model_v4/saturation/Q15669_table

rasp: /data/raw_data/computational_data/rasp_data/cosmic_tsg/rhoh/free/AF_1-191/model_v4

RMI2: cancermuts: /data/raw_data/computational_data/cancermuts_data/cosmic_tsg/RMI2/pancancer_clinvar_saturation/20092024

mutatex: /data/raw_data/computational_data/mutatex_data/cosmic_tsg/rmi2/free/stability/mutatex_runs/AF_14-147/model_v4/saturation/Q96E14_table

rasp: /data/raw_data/computational_data/rasp_data/cosmic_tsg/rmi2/free/AF_14-147/model_v4

RSPO2: cancermuts: /data/raw_data/computational_data/cancermuts_data/cosmic_tsg/RSPO2/pancancer_clinvar_saturation/20092024

mutatex: /data/raw_data/computational_data/mutatex_data/cosmic_tsg/rspo2/free/stability/mutatex_runs/AF_35-243/model_v4/saturation/Q6UXX9_table

rasp: /data/raw_data/computational_data/rasp_data/cosmic_tsg/rspo2/free/AF_35-243/model_v4

elenapapaleo commented 2 months ago

al imported into mavisp_data_saturation and the csv will be done with mavisp.py at the end of the week (i.e. 28/09/2024)