ELELAB / mavisp_data_collection

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Import SFRP4, SMAD2 and SMAD3 from automatization #219

Closed pablosanchezizquierdo closed 1 month ago

pablosanchezizquierdo commented 1 month ago

SFRP4: cancermuts: /data/raw_data/computational_data/cancermuts_data/cosmic_tsg/SFRP4/pancancer_clinvar_saturation/30092024

mutatex: /data/raw_data/computational_data/mutatex_data/cosmic_tsg/sfrp4/free/stability/mutatex_runs/AF_1-144/model_v4/saturation/Q6FHJ7_table /data/raw_data/computational_data/mutatex_data/cosmic_tsg/sfrp4/free/stability/mutatex_runs/AF_168-310/model_v4/saturation/Q6FHJ7_table

rasp: /data/raw_data/computational_data/rasp_data/cosmic_tsg/sfrp4/free/AF_1-144/model_v4 /data/raw_data/computational_data/rasp_data/cosmic_tsg/sfrp4/free/AF_168-310/model_v4

SMAD2: cancermuts: /data/raw_data/computational_data/cancermuts_data/cosmic_tsg/SMAD2/pancancer_clinvar_saturation/30092024

mutatex: /data/raw_data/computational_data/mutatex_data/cosmic_tsg/smad2/free/stability/mutatex_runs/AF_6-80/model_v4/saturation/Q15796_table /data/raw_data/computational_data/mutatex_data/cosmic_tsg/smad2/free/stability/mutatex_runs/AF_112-183/model_v4/saturation/Q15796_table /data/raw_data/computational_data/mutatex_data/cosmic_tsg/smad2/free/stability/mutatex_runs/AF_261-467/model_v4/saturation/Q15796_table

rasp: /data/raw_data/computational_data/rasp_data/cosmic_tsg/smad2/free/AF_6-80/model_v4 /data/raw_data/computational_data/rasp_data/cosmic_tsg/smad2/free/AF_112-183/model_v4 /data/raw_data/computational_data/rasp_data/cosmic_tsg/smad2/free/AF_261-467/model_v4

SMAD3: cancermuts: /data/raw_data/computational_data/cancermuts_data/cosmic_tsg/SMAD3/pancancer_clinvar_saturation/30092024

mutatex: /data/raw_data/computational_data/mutatex_data/cosmic_tsg/smad3/free/stability/mutatex_runs/AF_5-143/model_v4/saturation/P84022_table /data/raw_data/computational_data/mutatex_data/cosmic_tsg/smad3/free/stability/mutatex_runs/AF_219-425/model_v4/saturation/P84022_table

rasp: /data/raw_data/computational_data/rasp_data/cosmic_tsg/smad3/free/AF_5-143/model_v4 /data/raw_data/computational_data/rasp_data/cosmic_tsg/smad3/free/AF_219-425/model_v4

elenapapaleo commented 1 month ago

imported in mavisp_data_saturation and the csv will be available with the batch to process on the 04/10/2024