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ELIFE-ASU / Neet

Simulating and analyzing dynamical network models
https://neet.readthedocs.io/en/stable
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basic landscape visualization #162

Closed hbsmith closed 5 years ago

hbsmith commented 5 years ago

After a lot of tinkering around, there just isn't a better way to visualize landscapes than what we were already doing for the networks themselves. Unfortunately no pure python packages exist which are good at this, so we continue to lean on graphviz+pygraphviz.

Would be nice to add some built in visualizations for highlighting attractor states or particular paths, but these can still be accomplished manually by the user.

This will have to be modified slightly once we update to the Landscape class to be LandscapeMixin.

Addresses #128

codecov-io commented 5 years ago

Codecov Report

Merging #162 into master will decrease coverage by 0.17%. The diff coverage is 37.5%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #162      +/-   ##
==========================================
- Coverage   88.09%   87.91%   -0.18%     
==========================================
  Files          16       16              
  Lines        1436     1440       +4     
==========================================
+ Hits         1265     1266       +1     
- Misses        171      174       +3
Impacted Files Coverage Δ
neet/synchronous.py 96.02% <25%> (-1.66%) :arrow_down:
neet/network.py 63.7% <50%> (ø) :arrow_up:

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