ELIFE-ASU / Neet

Simulating and analyzing dynamical network models
https://neet.readthedocs.io/en/stable
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Landscape topology #67

Closed bcdaniels closed 6 years ago

bcdaniels commented 6 years ago

We'd like something analogous to the "architecture" structure that calculates everything about the topology of state transition graph. This would include attractors, attractor basins, trajectory lengths, the transition graph in-degree, etc.

dglmoore commented 6 years ago

Here's the basic structure I have in mind. Please add additional features we'd like to see as additional comments.

class LandscapeTopology:
    def __init__(self, net, size=None):
        pass
    def attractors(self):
        pass
    def basins(self):
        pass
    def graph(self):
        pass
    def distance_to_attractor(self):
        pass
    def in_degree(self):
        pass